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James Bardwell

Protein Folding, Heat Shock Proteins

James Bardwell
James Bardwell

Assistant Professor of Biology

Ph.D., University of Wisconsin-Madison

Dept:  
Office Address:  4003 Natural Sciences Building
Phone:  (734) 764-8028

Email:  jbardwell@umich.edu



Bardwell Lab Web Site
One of the fundamental unsolved problems in biology is how proteins attain their proper three-dimensional conformation. Protein folding catalysts are vital in assisting proteins in this process. My laboratory is interested in understanding the molecular mechanism of these folding helpers. Understanding how the protein folding process is assisted is important to understand not just the vital protein folding process itself, but also the numerous pathologies, like Alzheimer's and cystic fibrosis, that result from defective protein folding. We study the disulfide bond formation step in protein folding. We found that this is a catalyzed process, and have shown how disulfide bond formation is linked to cellular metabolism. One indication of how vital disulfide bonds are for protein folding and stability is the fact that their reduction will often cause proteins to unfold. We made the unexpected finding that disulfide bond formation is catalyzed. We developed a disulfide indicator strain and used it to select for mutants severely defective in disulfide bond formation. We discovered the DsbA protein and showed that the active site of DsbA is itself a disulfide bond that is reduced catalytically using disulfide bond formation on folding proteins. We also found a second protein DsbB, which acts to reoxidize DsbA. We have recently succeeded in the in vitro reconstitution of the complete disulfide bond catalysis system. We determined where the oxidative power for protein folding originates and have shown that disulfide bond formation is linked to electron transport. DsbB transfers pairs of electrons on to ubiquinone, which then donates them to cytochrome oxidases, which reduce oxygen. These findings open up an experimentally approachable system to study the catalysis of an important step in the protein folding process. Since disulfide bond formation is one of the few covalent modifications that occurs in protein folding we are in the unusual and advantageous position of being able to phrase our questions about the catalysis of a protein folding reaction in clear biochemical terms. Our findings suggest that catalysts may be required for disulfide formation in all organisms, a fact that is now generally accepted. Isomerization of disulfide bonds is vital for the proper folding of proteins that possess multiple disulfides, including many proteins of pharmacological importance. Great progress has been made in the last few years in understanding the mechanism of disulfide oxidation in vivo, but the mechanism of isomerization is much less clear. We have shown how the oxidative and isomerase pathways are kept separate in the cell; we have used a combination of genetics, biochemistry and in vitro protein design to convert the isomerase, DsbC into a net donor of disulfide bonds.


Representative Publications

Bardwell, J. C., K. McGovern, and J. Beckwith. 1991. Identification of a protein required for disulfide bond formation in vivo. Cell 67(3):581-589.

Martin, J. L., J. C. Bardwell, and J. Kuriyan. 1993. Crystal structure of the DsbA protein required for disulphide bond formation in vivo. Nature 365(6445):464-468.

Bardwell, J. C., and J. Beckwith. 1993. The bonds that tie: catalyzed disulfide bond formation. Cell 74(5):769-771.

Grauschopf, U., J. R. Winther, P. Korber, T. Zander, P. Dallinger, and J. C. Bardwell. 1995. Why is DsbA such an oxidizing disulfide catalyst? Cell 83(6):947-955.

Bader, M., W. Muse, D. P. Ballou, C. Gassner, and J. C. Bardwell. 1999. Oxidative protein folding is driven by the electron transport system. Cell 98(2):217-227.

Staker, B. L., P. Korber, J. C. Bardwell, and M. A. Saper.. 2000. Structure of Hsp15 reveals a novel RNA-binding motif. EMBO J19(4):749-757.

Bader, M. W., T. Xie, C. A. Yu, and J. C. Bardwell. 2000. Disulfide bonds are generated by quinone reduction. J Biol Chem 275(34):26082-26088.

Bader, M., A. Hiniker, J. Regeimbal, D. Goldstone, P. Haebel, P. Metcalf, and J.C.A. Bardwell 2001. Turning a disulfide isomerase into an oxidase EMBO J 20:1555-1562.

Regeimbal J, Bardwell JC. 2002 DsbB catalyzes disulfide bond formation de novo. J. Biol Chem. 2002 Sep 6;277(36):32706-13.

Collet JF, Bardwell JC.2002 Disulfides out of thin air. Nat Struct Biol. 9(1):2-3.

Regeimbal J, Gleiter S, Trumpower BL, Yu CA, Diwakar M, Ballou DP, Bardwell JC. Disulfide bond formation involves a quinhydrone-type charge-transfer complex. Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 13779-84. Epub 2003 Nov 11.

H. Kadokura, H. Tian, T. Zander, JCA Bardwell J. Beckwith. Snapshots of DsbA in Action: Detection of Proteins in the Process of Oxidative Folding. Science in press.

Masip L, Pan JL, Haldar S, Penner-Hahn JE, DeLisa MP, Georgiou G, Bardwell JC, Collet JF. An engineered pathway for the formation of protein disulfide bonds. Science in press.


      
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