Last update:
March 24, 2014

© University of Michigan

 

Publications

Independent Career
Postdoctoral Research
Graduate Research
Undergraduate Research

Independent Career: 2010 - Present
University of Michigan

  • K.S. Karunatilaka, E.A. Cameron, E.C. Martens, N.M. Koropatkin and JSB, "Glycan Catabolism by Human Gut Symbionts Involves Dynamic Protein Interactions," submitted (2013).

  • J.E. Donehue, E. Wertz, C.N. Talicska and JSB, "Plasmon-Enhanced Brightness and Photostability from Single Fluorescent Proteins Coupled to Gold Nanorods," submitted (2013).

  • D.J. Rowland and JSB, "Top-Hat and Asymmetric Gaussian Based Fitting Functions for Quantifying Directional Single-Molecule Motion," ChemPhysChem, 15 712-720 (2014). DOI

  • JSB, "Intracellular dynamics of bacterial proteins are revealed by super-resolution microscopy," Biophysics Journal, 105 1547-1548 (2013). DOI

  • J.E. Donehue, B.L. Haas, E. Wertz, C.N. Talicska and JSB, "Plasmon-enhanced emission from single fluorescent proteins," Proceedings of SPIE, 8597 85970J (2013). DOI

  • E. Wertz, J.E. Donehue, C. Hayes and JSB, "Plasmon-enhanced fluorescence intensities and rates permit super-resolution imaging of enhanced local fields," Proceedings of SPIE, 8590 85900U (2013). DOI

  • K.S. Karunatilaka, B.R. Coupland, E.A. Cameron, E.C. Martens, N.M. Koropatkin and JSB, "Single-Molecule Imaging Can Be Achieved in Live Obligate Anaerobic Bacteria," Proceedings of SPIE, 8590 85900K (2013). DOI

  • M.-C. Cheng, A. T. Leske, T. Matsuoka, B. C. Kim, J.-S. Lee, M. A. Burns, S. Takayama and JSB, "Super-Resolution Imaging of PDMS Nanochannels by Single-Molecule Micelle-Assisted Blink Microscopy," Journal of Physical Chemistry B, 117 4406-4411 (2013). DOI

  • Y. Liao, S.K. Yang, K. Koh, A.J. Matzger and JSB, "Heterogeneous Single-Molecule Diffusion in One- Two- and Three-Dimensional Microporous Coordination Polymers: Directional, Trapped and Immobile Guests," Nano Letters, 12 3080 (2012). DOI

  • JSB, "Extending the tools of single-molecule fluorescence imaging to real problems in microbiology," Molecular Microbiology, 85 1 (2012). DOI

  • JSB, "Moving toward the future of single-molecule-based super-resolution imaging," Biopolymers, 95 287 (2011). DOI

  • JSB, "Live-Cell Single-Molecule Imaging," Encyclopedia of Biophysics, vol. 1, G.C.K. Roberts (ed.), Springer (Heidelberg, 2013). ISBN 978-3-642-16711-9

  • JSB, "Photoactivated Localization Microscopy (PALM)," Encyclopedia of Biophysics, vol. 1, G.C.K. Roberts (ed.), Springer (Heidelberg, 2013). ISBN 978-3-642-16711-9

Postdoctoral Research: 2007 - 2009
W. E. Moerner Lab
Stanford University

  • JSB, E.D. Goley, L. Shapiro and W.E. Moerner, "Three-Dimensional Super-Resolution Imaging of the Midplane Protein FtsZ in Live Caulobacter crescentus Cells Using Astigmatism," ChemPhysChem, 13 1007 (2012). DOI

  • JSB, L. Shapiro and W.E. Moerner, "Exploring Protein Superstructures and Dynamics in Live Bacterial Cells Using Single-Molecule and Superresolution Imaging," Methods in Molecular Biology, 783 139 (2011). ISBN

  • JSB and W.E. Moerner, "Live-cell single-molecule and superresolution imaging of proteins in bacteria," Proceedings of SPIE, 7905 79050Q (2011). DOI

  • JSB and W.E. Moerner, "Single-Molecule and Superresolution Imaging in Live Bacteria Cells," Cold Spring Harbor Perspectives in Biology, 2 a000448 (2010). DOI

  • M.A. Thompson, JSB, S. J. Lord, N. R. Conley and W. E. Moerner, "Molecules and Methods for Super-Resolution Imaging," Methods in Enzymology, 475 27-59 (2010). DOI

  • S.R.P. Pavani, M.A. Thompson, JSB, S.J. Lord, N. Liu, R.J. Twieg, R. Piestun and W.E. Moerner, "Three-Dimensional Single-Molecule Fluorescence Imaging Beyond the Diffraction Limit Using a Double-Helix Point Spread Function," Proceedings of the National Academy of Sciences, 106 2995-2999 (2009). DOI

  • JSB, M.A. Thompson, N.K. Tselentis, G.R. Bowman, L. Shapiro, and W.E. Moerner, "Superresolution Imaging in Live Caulobacter Crescentus Cells Using Photoswitchable Enhanced Yellow Fluorescent Protein," Proceedings of SPIE, 7185 71850I (2009). DOI

  • JSB, M.A. Thompson, N.K. Tselentis, G.R. Bowman, L. Shapiro, and W.E. Moerner, "Superresolution Imaging in Live Caulobacter Crescentus Cells Using Photoswitchable EYFP," Nature Methods, 5 947-949 (2008). DOI

  • N.R. Conley, Julie S. Biteen, and W.E. Moerner, "Cy3-Cy5 Covalent Heterodimers for Single-Molecule Photoswitching," Journal of Physical Chemistry B, 112 11878-11880 (2008). DOI

  • JSB, M.A. Thompson, N.K. Tselentis, L. Shapiro, and W.E. Moerner, "Superresolution Imaging in Live Bacterial Cells by Single-Molecule Active-Control Microscopy," CLEO/QELS Extended Abstracts, CFT2 (2008).DOI

Graduate Research: 2001 - 2006
Harry Atwater and Nate Lewis Groups
California Institute of Technology

  • M.C. Traub, Julie S. Biteen, B.S. Brunschwig, and N.S. Lewis, "Phosphine Functionalization of GaAs(111)A Surfaces," Journal of Physical Chemistry C, 112 18467-18473 (2008). DOI

  • M.C. Traub, Julie S. Biteen, B.S. Brunschwig, and N.S. Lewis, "Passivation of GaAs Nanocrystals by Chemical Functionalization," Journal of the American Chemical Society, 130 955-964 (2008). DOI

  • JSB, L.A. Sweatlock, H. Mertens, N.S. Lewis, H.A. Atwater, and A. Polman, "Plasmon-Enhanced Photoluminescence of Silicon Quantum Dots: Simulation and Experiment," Journal of Physical Chemistry C, 111 13372-13377 (2007). DOI

  • JSB, "Plasmon-Enhanced Silicon Nanocrystal Luminescence for Optoelectronic Applications," Dissertation, California Institute of Technology (2006). pdf

  • H. Mertens, A. Polman, JSB, and H.A. Atwater, "Polarization-Selective Plasmon-Enhanced Silicon Quantum Dot Luminescence," Nano Letters, 6 2622-2625 (2006). DOI

  • L.J. Webb, D.J. Michalak, JSB, B.S. Brunschwig, A.S.Y. Chan, D.W. Knapp, H.M. Meyer, E.J. Nemanick, M.C. Traub, and N.S. Lewis, "High-Resolution Soft X-ray Photoelectron Spectroscopic Studies and Scanning Auger Microscopy Studies of the Air Oxidation of Alkylated Silicon(111) Surfaces," Journal of Physical Chemistry B, 110 23450-23459 (2006). DOI

  • JSB, N.S. Lewis, H.A. Atwater, H. Mertens, and A. Polman, "Spectral tuning of plasmon-enhanced silicon quantum dot luminescence," Applied Physics Letters, 88 131109 (2006). DOI

  • M.C. Traub, Julie S. Biteen, D.J. Michalak, L.J. Webb, B.S. Brunschwig, and N.S. Lewis, "High-Resolution X-ray Photoelectron Spectroscopy of Chlorine-Terminated GaAs(111)A Surfaces," Journal of Physical Chemistry B, 110 15641-15644 (2006). DOI

  • JSB, D. Pacifici, N.S. Lewis, and H.A. Atwater, "Enhanced radiative emission rate and quantum efficiency in coupled silicon nanocrystal-nanostructured gold emitters," Nano Letters, 5 1768-1773 (2005). DOI

  • A.L. Tchebotareva, M.J.A. de Dood, JSB, H.A. Atwater, and A. Polman, "Quenching of Si nanocrystal photoluminescence by doping with gold or phosphorous," Journal of Luminescence, 114 137-144 (2005). DOI

  • L.J. Webb, E.J. Nemanick, JSB, D.W. Knapp, D.J. Michalak, M.C. Traub, A.S.Y. Chan, B.S. Brunschwig, and N.S. Lewis, "High-Resolution X-ray Photoelectron Spectroscopic Studies of Alkylated Silicon(111) Surfaces," Journal of Physical Chemistry B, 109 3930-3937 (2005). DOI

  • JSB, N.S. Lewis, H.A. Atwater, and A. Polman, "Size-dependent oxygen-related electronic states in silicon nanocrystals," Applied Physics Letters, 84 5389-5391 (2004). DOI

  • JSB, A.L. Tchebotareva, A. Polman, N.S. Lewis, and H.A. Atwater, "Controlled passivation and luminescence blue shifts of isolated silicon nanocrystals," MRS Proceedings, 770 I6.2.1 (2003).

Undergraduate Research: 1999 - 2001
Herschel Rabitz Group
Princeton University

  • JSB, J.M. Geremia, and H. Rabitz, "Closed-loop quantum control utilizing time domain maps," Chemical Physics, 290 35-45 (2003). DOI

  • JSB, J.M. Geremia, and H. Rabitz, "Optimal quantum control field design using logarithmic maps," Chemical Physics Letters, 348 440-446 (2001). DOI